I. Liste des productions de l’umr 1347 Agroécologie Articles dans des revues internationales ou nationales avec comité de lecture

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titreI. Liste des productions de l’umr 1347 Agroécologie Articles dans des revues internationales ou nationales avec comité de lecture
date de publication28.10.2017
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  1. Aimé S., Alabouvette C., Steinberg C., Olivain C. (2013). The endophytic strain Fusarium oxysporum Fo47: a good candidate for priming the defense responses in tomato roots. Mol. Plant-Microbe Interact. 26:918-926. IPM

  2. Alignier A., Ricci B., Biju-Duval L., Petit S. (2013). Identifying the relevant spatial and temporal scales in plant species occurrence models: The case of arable weeds in landscape mosaic of crops. Ecol. Complex. 15:17-25. EcolDur

  3. Ansemant T., Mahy S., Piroth C., Ornetti P., Ewing S., Guilland J.-C., Croisier D., Duvillard L., Chavanet P., Maillefert J.-F., Piroth L. (2013). Severe hypovitaminosis D correlates with increased inflammatory markers in HIV infected patients. BMC Infect. Dis. 13: art 7 (7p.). MERS

  4. Atif R.M., Boulisset F., Conreux C., Thompson R., Ochatt S.J. (2013). In vitro auxin treatment promotes cell division and delays endoreduplication in developing seeds of the model legume species Medicago truncatula. Physiol. Plant. 148:549-559. GEAPSI

  5. Babut M., Arts G., Caracciolo A.B., Carluer N., Domange N., Friberg N., Gouy V., Grung M., Lagadic L., Martin-Laurent F., Mazzella N., Pesce S., Real B., Reichenberger S., Roex E.W.M., Romijn K., Rottele M., Stenrod M., Tournebize J., Vernier F., Vindimian E. (2013). Pesticide risk assessment and management in a globally changing world-report from a European interdisciplinary workshop. Environ. Sci. Pollut. Res. 20:8298-8312. EcolDur

  6. Barnard R.L., Osborne C.A., Firestone M.K. (2013). Responses of soil bacterial and fungal communities to extreme desiccation and rewetting. Isme J. 7:2229-2241. EcolDur

  7. Baumann K., Dignac M.-F., Rumpel C., Bardoux G., Sarr A., Steffens M., Maron P.-A. (2013). Soil microbial diversity affects soil organic matter decomposition in a silty grassland soil. Biogeochemistry. 114:201-212. EcolDur (GenoSol)

  8. Baux A., Colbach N., Allirand J.M., Jullien A., Ney B., Pellet D. (2013). Insights into temperature effects on the fatty acid composition of oilseed rape varieties. Eur. J. Agron. 49:12-19. EcolDur

  9. Beaune D., Fruth B., Bollache L., Hohmann G., Bretagnolle F. (2013). Doom of the elephant-dependent trees in a Congo tropical forest. For. Ecol. Manage. 295:109-117. MERS

  10. Beaune D., Bollache L., Muganza M.D., Bretagnolle F., Hohmann G., Fruth B. (2013). Artificial germination activation of Dialium corbisieri by imitation of ecological process. Journal of Sustainable Forestry. 32:565-575. MERS

  11. Beaune D., Bretagnolle F., Bollache L., Bourson C., Hohmann G., Fruth B. (2013). Ecological services performed by the bonobo (Pan paniscus): seed dispersal effectiveness in tropical forest. J. Trop. Ecol. 29:367-380. MERS

  12. Beaune D., Bretagnolle F., Bollache L., Hohmann G., Surbeck M., Fruth B. (2013). Seed dispersal strategies and the threat of defaunation in a Congo forest. Biodivers. Conserv. 22:225-238. MERS

  13. Beaune D., Bretagnolle F., Bollache L., Hohmann G., Surbeck M., Bourson C., Fruth B. (2013). The Bonobo-Dialium Positive Interactions: Seed Dispersal Mutualism. Am. J. Primatol. 75:394-403. MERS

  14. Betelli L., Duquenne P., Grenouillet F., Simon X., Scherer E., Géhin E., Hartmann A. (2013). Development and evaluation of a method for the quantification of airborne Thermoactinomyces vulgaris by real-time PCR. J. Microbiol. Methods. 92:25-32. MERS

  15. Billiot B., Cointault F., Journaux L., Simon J.-C., Gouton P. (2013). 3D Image Acquisition System Based on Shape from Focus Technique. Sensors. 13:5040-5053. EcolDur

  16. Binet M.N., Sage L., Malan C., Clément J.C., Redecker D., Wipf D., Geremia R.A., Lavorel S., Mouhamadou B. (2013). Effects of mowing on fungal endophytes and arbuscular mycorrhizal fungi in subalpine grasslands. Fungal Ecol. 6:248-255. IPM

  17. Blazewicz S.J., Barnard R.L., Daly R.A., Firestone M.K. (2013). Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. Isme J. 7:2061-2068. EcolDur

  18. Blot S., Charles P.E. (2013). Fungal sepsis in the ICU: are we doing better? Trends in incidence, diagnosis, and outcome. Minerva Anestesiol. 79:1396-1405. MERS

  19. Bohan D.A., Woodward G. (2013). Preface. Editorial commentary: The potential for network approaches to improve knowledge, understanding, and prediction of the structure and functioning of agricultural systems. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:XIII-XVIII. EcolDur

  20. Bohan D.A., Raybould A., Mulder C., Woodward G., Tamaddoni-Nezhad A., Bluthgen N., Pocock M.J.O., Muggleton S., Evans D.M., Astegiano J., Massol F., Loeuille N., Petit S., Macfadyen S. (2013). Networking agroecology: integrating the diversity of agroecosystem interactions. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:1-67. EcolDur

  21. Boisard L., Andriot I., Arnould C., Achilleos C., Salles C., Guichard E. (2013). Structure and composition of model cheeses influence sodium NMR mobility, kinetics of sodium release and sodium partition coefficients. Food Chem. 136:1070-1077. IPM

  22. Bonneau L., Huguet S., Wipf D., Pauly N., Truong H.-N. (2013). Combined phosphate and nitrogen limitation generates a nutrient stress transcriptome favorable for arbuscular mycorrhizal symbiosis in Medicago truncatula. New Phytol. 199:188-202. IPM

  23. Casieri L., Ait Lahmidi N., Doidy J., Veneault-Fourrey C., Migeon A., Bonneau L., Courty P.-E., Garcia K., Charbonnier M., Delteil A., Brun A., Zimmermann S., Plassard C., Wipf D. (2013). Biotrophic transportome in mutualistic plant–fungal interactions. Mycorrhiza. 23:597-625. IPM

  24. Charles P.E., Bruyère R. (2013). Preventing Invasive Candidiasis in High-Risk Critically III Patients: Avoid Antibiotics or Give Probiotics? Crit. Care Med. 41:689-690. MERS

  25. Chauvel B., Martinez Q. (2013). Allergy to common ragweed: What means for checking its invasion? Rev. Fr. Allergol. 53:229-234. EcolDur

  26. Colbach N., Mézière D. (2013). Using a sensitivity analysis of a weed dynamics model to develop sustainable cropping systems. I. Annual interactions between crop management techniques and biophysical field state variables. J. Agric. Sci. 151:229-245. EcolDur

  27. Colbach N., Granger S., Mézière D. (2013). Using a sensitivity analysis of a weed dynamics model to develop sustainable cropping systems. II. Long-term effect of past crops and management techniques on weed infestation. J. Agric. Sci. 151:247-267. EcolDur

  28. Colbach N., Tschudy C., Meunier D., Houot S., Nicolardot B. (2013). Weed seeds in exogenous organic matter and their contribution to weed dynamics in cropping systems. A simulation approach. Eur. J. Agron. 45:7-19. EcolDur

  29. Colinon C., Deredjian A., Hien E., Brothier E., Bouziri L., Cournoyer B., Hartmann A., Henry S., Jolivet C., Ranjard L., Nazaret S. (2013). Detection and enumeration of Pseudomonas aeruginosa in soil and manure assessed by an ecfX qPCR assay. J. Appl. Microbiol. 114:1734-1749. MERS EcolDur (GenoSol)

  30. Correa-Galeote D., Marco D.E., Tortosa G., Bru D., Philippot L., Bedmar E.J. (2013). Spatial distribution of N-cycling microbial communities showed complex patterns in constructed wetland sediments. FEMS Microbiol. Ecol. 83:340-351. EcolDur

  31. Darmency H. (2013). Pleiotropic effects of herbicide-resistance genes on crop yield: a review. Pest Manag Sci. 69:897-904. GEAPSI

  32. Davey J.S., Vaughan I.P., Andrew King R., Bell J.R., Bohan D.A., Bruford M.W., Holland J.M., Symondson W.O.C. (2013). Intraguild predation in winter wheat: prey choice by a common epigeal carabid consuming spiders. J. Appl. Ecol. 50:271-279. EcolDur

  33. Délye C. (2013). Unravelling the genetic bases of non-target-site-based resistance (NTSR) to herbicides: a major challenge for weed science in the forthcoming decade. Pest Manag Sci. 69:176-187. GEAPSI

  34. Délye C., Deulvot C., Chauvel B. (2013). DNA Analysis of Herbarium Specimens of the Grass Weed Alopecurus myosuroides Reveals Herbicide Resistance Pre-Dated Herbicides. PLoS One. 8:e75117 (8p.). GEAPSI EcolDur

  35. Délye C., Jasieniuk M., Le Corre V. (2013). Deciphering the evolution of herbicide resistance in weeds. Trends Genet. 29:649-658. GEAPSI

  36. Délye C., Menchari Y., Michel S., Cadet E., Le Corre V. (2013). A new insight into arable weed adaptive evolution: mutations endowing herbicide resistance also affect germination dynamics and seedling emergence. Ann. Bot. 111:681-691. GEAPSI

  37. Duhoux A., Délye C. (2013). Reference Genes to Study Herbicide Stress Response in Lolium sp.: Up-Regulation of P450 Genes in Plants Resistant to Acetolactate-Synthase Inhibitors. PLoS One. 8:e63576 (12p.). GEAPSI

  38. Dupuy A.-M., Philippart F., Pean Y., Lasocki S., Charles P.-E., Chalumeau M., Claessens Y.-E., Quenot J.-P., Gras-Le Guen C., Ruiz S., Luyt C.-E., Roche N., Stahl J.-P., Bedos J.-P., Pugin J., Gauzit R., Misset B., Brun-Buisson C., Maurice Rapin Institute Biomarkers G. (2013). Role of biomarkers in the management of antibiotic therapy: an expert panel review: I - currently available biomarkers for clinical use in acute infections. Annals of intensive care. 3:22 (8p.). MERS

  39. Duru M., Jouany C., Theau J.-P., Granger S., Cruz P. (2013). L'écologie fonctionnelle pour évaluer et prédire l'aptitude des prairies permanentes à rendre des services. Fourrages. 213:21-34. EcolDur

  40. Elmaghrabi A.M., Ochatt S., Rogers H.J., Francis D. (2013). Enhanced tolerance to salinity following cellular acclimation to increasing NaCl levels in Medicago truncatula. Plant Cell Tissue Organ Cult. 114:61-70. GEAPSI

  41. Flores F., Hybl M., Knudsen J.C., Marget P., Muel F., Nadal S., Narits L., Raffiot B., Sass O., Solis I., Winkler J., Stoddard F.L., Rubiales D. (2013). Adaptation of spring faba bean types across European climates. Field Crop. Res. 145:1-9. GEAPSI

  42. Galipaud M., Bollache L., Dechaume-Moncharmont F.X. (2013). Assortative mating by size without a size-based preference: the female-sooner norm as a mate-guarding criterion. Anim. Behav. 85:35-41. MERS

  43. Garcia-Sanchez A.M., Ariza C., Ubeda J.M., Martin-Sanchez P.M., Jurado V., Bastian F., Alabouvette C., Saiz-Jimenez C. (2013). Free-living amoebae in sediments from the Lascaux Cave in France. Int. J. Speleol. 42:9-13. IPM

  44. Gard B., Bretagnolle F., Dessaint F., Laitung B. (2013). Invasive and native populations of common ragweed exhibit strong tolerance to foliar damage. Basic Appl. Ecol. 14:28–35. EcolDur

  45. Germon J.-C. (2013). Gestion de la fertilisation azotée en agriculture : enjeux environnementaux et perspectives agronomiques au niveau du territoire français. Cah. Agric. 22:241-248. EcolDur

  46. Gibot-Leclerc S., Abdennebi-Abdemessed N., Reibel C., Colbach N. (2013). Non-host facilitators, a new category that unexpectedly favours parasitic weeds. Agron. Sustain. Dev. 33:787-793. EcolDur

  47. Gibot-Leclerc S., Dessaint F., Reibel C., Le Corre V. (2013). Phelipanche ramosa (L.) Pomel populations differ in life-history and infection response to hosts. Flora. 208:247-252. EcolDur GEAPSI

  48. Gilg O., Moe B., Hanssen S.A., Schmidt N.M., Sittler B., Hansen J., Reneerkens J., Sabard B., Chastel O., Moreau J., Phillips R.A., Oudman T., Biersma E.M., Fenstad A.A., Lang J., Bollache L. (2013). Trans-equatorial migration routes, staging sites and wintering areas of a high-arctic avian predator: the long-tailed skua (Stercorarius longicaudus). PLoS One. 8:e64614 (10p.). MERS

  49. Griffiths B.S., Philippot L. (2013). Insights into the resistance and resilience of the soil microbial community. FEMS Microbiol Rev. 37:112-129. EcolDur

  50. Guillemin J.P., Gardarin A., Granger S., Reibel C., Munier-Jolain N., Colbach N. (2013). Assessing potential germination period of weeds with base temperatures and base water potentials. Weed Res. 53:76-87. EcolDur

  51. Guitard J., Angoulvant A., Letscher-Bru V., L’Ollivier C., Cornet M., Dalle F., Grenouillet F., Lacroix C., Vekhoff A., Maury E., Caillot D., Charles P.E., Pili-Floury S., Herbrecht R., Raffoux E., Brethon B., Hennequin C. (2013). Invasive infections due to Candida norvegensis and Candida inconspicua: report of 12 cases and review of the literature. Med. Mycol. 51:795-799. MERS

  52. Hartney S.L., Mazurier S., Girard M.K., Mehnaz S., Davis II E.W., Gross H., Lemanceau P., Loper J.E. (2013). Ferric-Pyoverdine Recognition by Fpv Outer Membrane Proteins of Pseudomonas protegens Pf-5. J. Bacteriol. 195:765-776. EcolDur

  53. Hussain S., Devers-Lamrani M., Spor A., Rouard N., Porcherot M., Béguet J., Martin-Laurent F. (2013). Mapping field spatial distribution patterns of isoproturon-mineralizing activity over a three-year winter wheat/rape seed/barley rotation. Chemosphere 90:2499-2511. EcolDur

  54. Hussain T., Roohi A., Munir S., Ahmed I., Khan J., Edel-Hermann V., Kim K.Y., Anees M. (2013). Biochemical characterization and identification of bacterial strains isolated from drinking water sources of Kohat, Pakistan. Afr. J. Microbiol. Res. 7:1579-1590. IPM

  55. Jeandroz S., Lamotte O., Astier J., Rasul S., Trapet P., Besson-Bard A., Bourque S., Nicolas-Frances V., Ma W., Berkowitz G.A., Wendehenne D. (2013). There's more to the picture than meets the eye: nitric oxide cross talk with Ca2+ signaling. Plant Physiol. 163:459-470. IPM

  56. Jones C.M., Graf D.R., Bru D., Philippot L., Hallin S. (2013). The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink. ISME J. 7:417-426. EcolDur

  57. Jouquet P., Maron P.-A., Nowak V., Duc T.T. (2013). Utilization of microbial abundance and diversity as indicators of the origin of soil aggregates produced by earthworms. Soil Biol. Biochem. 57:950-952. EcolDur (GenoSol)

  58. Kaisermann A., Roguet A., Nunan N., Maron P.-A., Ostle N., Lata J.-C. (2013). Agricultural management affects the response of soil bacterial community structure and respiration to water-stress. Soil Biol. Biochem. 66:69-77. EcolDur (GenoSol)

  59. Kati V., Le Corre V., Michel S., Jaffrelo L., Poncet C., Délye C. (2013). Isolation and Characterisation of 11 Polymorphic Microsatellite Markers in Papaver rhoeas L. (Corn Poppy), a Major Annual Plant Species from Cultivated Areas. Int. J. Mol. Sci. 14:470-479. GEAPSI

  60. Koegel S., Lahmidi N.A., Arnould C., Chatagnier O., Walder F., Ineichen K., Boller T., Wipf D., Wiemken A., Courty P.E. (2013). The family of ammonium transporters (AMT) in Sorghum bicolor: two AMT members are induced locally, but not systemically in roots colonized by arbuscular mycorrhizal fungi. New Phytol. 198:853-865. IPM

  61. Koen E., Lamotte O., Besson-Bard A., Bourque S., Nicolas-Frances V., Jeandroz S., Wendehenne D. (2013). Le monoxyde d’azote, un acteur de l’immunité chez les plantes. M S-Medecine Sciences. 29:309-316. IPM

  62. Koen E., Besson-Bard A., Duc C., Astier J., Gravot A., Richaud P., Lamotte O., Boucherez J., Gaymard F., Wendehenne D. (2013). Arabidopsis thaliana nicotianamine synthase 4 is required for proper response to iron deficiency and to cadmium exposure. Plant Sci. 209:1-11. IPM

  63. Koné M., Koné T., Kouakou H.T., Konaté S., Ochatt J.S. (2013). Plant regeneration via direct shoot organogenesis from cotyledon explants of Bambara groundnut, Vigna subterranea (L.) Verdc. Biotechnol. Agron. Soc. 17:584-592. GEAPSI

  64. Lacanette D., Large D., Ferrier C., Aujoulat N., Bastian F., Denis A., Jurado V., Kervazo B., Konik S., Lastennet R., Malaurent P., Saiz-Jimenez C. (2013). A laboratory cave for the study of wall degradation in rock art caves: an implementation in the Vezere area. J. Archaeol. Sci. 40:894-903. IPM

  65. Ladoire S., Pauchard L.-A., Barbar S.-D., Tissieres P., Croisier-Bertin D., Charles P.-E. (2013). Impact of the prone position in an animal model of unilateral bacterial pneumonia undergoing mechanical ventilation. Anesthesiology. 118:1150-1159. MERS

  66. Lagrue C., Guvenatam A., Bollache L. (2013). Manipulative parasites may not alter intermediate host distribution but still enhance their transmission: field evidence for increased vulnerability to definitive hosts and non-host predator avoidance. Parasitology. 140:258-265. MERS

  67. Leplat J., Friberg H., Abid M., Steinberg C. (2013). Survival of Fusarium graminearum, the causal agent of Fusarium head blight. A review. Agron. Sustain. Dev. 33:97-111. IPM

  68. Le Roux X., Schmid B., Poly F., Barnard R.L., Niklaus P.A., Guillaumaud N., Habekost M., Oelmann Y., Philippot L., Salles J.F., Schloter M., Steinbeiss S., Weigelt A. (2013). Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands. PloS One. 8:e61069 (11p.). EcolDur

  69. Lesuffleur F., Salon C., Jeudy C., Cliquet J.B. (2013). Use of a 15N2 labelling technique to estimate exudation by white clover and transfer to companion ryegrass of symbiotically fixed N. Plant Soil. 369:187-197. GEAPSI

  70. Lienhard P., Tivet F., Chabanne A., Dequiedt S., Lelièvre M., Sayphoummie S., Leudphanane B., Chemidlin Prévost-Bouré N., Séguy L., Maron P.A., Ranjard L. (2013). No-till and cover crops shift soil microbial abundance and diversity in Laos tropical grasslands. Agron. Sustain. Dev. 33:375-384. EcolDur (GenoSol)

  71. Lienhard P., Terrat S., Mathieu O., Lévêque J., Chemidlin Prévost-Bouré N., Nowak V., Regnier T., Faivre C., Sayphoummie S., Panyasiri K., Tivet F., Ranjard L., Maron P.-A. (2013). Soil microbial diversity and C turnover modified by tillage and cropping in Laos tropical grassland. Environ. Chem. Lett. 11:391-398. EcolDur (GenoSol)

  72. Li Kim Khiook I., Schneider C., Heloir M.-C., Bois B., Daire X., Adrian M., Trouvelot S. (2013). Image analysis methods for assessment of H2O2 production and Plasmopara viticola development in grapevine leaves: Application to the evaluation of resistance to downy mildew. J. Microbiol. Methods. 95:235-244. IPM

  73. Liu Y.-B., Wei W., Ma K.-P., Darmency H. (2013). Spread of introgressed insect-resistance genes in wild populations of Brassica juncea: a simulated in-vivo approach. Transgenic Res. 22:747-756. GEAPSI

  74. Liu Y., Gianinazzi-Pearson V., Arnould C., Wipf D., Zhao B., van Tuinen D. (2013). Fungal genes related to calcium homeostasis and signalling are upregulated in symbiotic arbuscular mycorrhiza interactions. Fungal Biol. 117:22-31. IPM

  75. Liu Y.-B., Wei W., Ma K., Li J., Liangd Y., Darmency H. (2013). Consequences of gene flow between oilseed rape (Brassica napus) and its relatives. Plant Sci. 211:42-51. GEAPSI

  76. Locatelli A., Spor A., Jolivet C., Piveteau P., Hartmann A. (2013). Biotic and abiotic soil properties influence survival of Listeria monocytogenes in soil. Plos One. 8:e75969 (8p.). MERS EcolDur

  77. Locatelli A., Depret G., Jolivet C., Henry S., Dequiedt S., Piveteau P., Hartmann A. (2013). Nation-wide study of the occurrence of Listeria monocytogenes in French soils using culture-based and molecular detection methods. J. Microbiol. Methods. 93:242-250. MERS (GenoSol)

  78. Luis P., Gauthier A., Trouvelot S., Poinssot B., Frettinger P. (2013). Identification of Plasmopara viticola Genes Potentially Involved in Pathogenesis on Grapevine Suggests New Similarities Between Oomycetes and True Fungi. Phytopathology. 103:1035-1044. IPM

  79. Lyautey E., Hallin S., Teissier S., Iribar A., Compin A., Philippot L., Garabetian F. (2013). Abundance, activity and structure of denitrifier communities in phototrophic river biofilms (River Garonne, France). Hydrobiologia. 716:177-187. EcolDur

  80. Manzoor H., Kelloniemi J.-P., Chiltz A., Wendehenne D., Pugin A., Poinssot B., Garcia-Brugger A. (2013). Involvement of the glutamate receptor AtGLR3.3 in plant defense signaling and resistance to Hyaloperonospora arabidopsidis. Plant J. 76:466-480. IPM

  81. Martin-Laurent F., Kandeler E., Petric I., Djuric S., Karpouzas D. (2013). ECOFUN-MICROBIODIV: an FP7 European project for developing and evaluating innovative tools for assessing the impact of pesticides on soil functionalmicrobial diversity—towards new pesticide registration regulation? Environ Sci Pollut Res. 20:1203-1205. EcolDur

  82. Martin-Sanchez P.M., Bastian F., Alabouvette C., Saiz-Jimenez C. (2013). Real-time PCR detection of Ochroconis lascauxensis involved in the formation of black stains in the Lascaux Cave, France. Sci. Total Environ. 443:478-484. IPM

  83. Massol F., Petit S. (2013) Interaction networks in agricultural landscape mosaics. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:291-338. EcolDur

  84. Melander B., Munier-Jolain N.M., Charles R., Wirth J., Schwarz J., van der Weide R., Bonin L., Jensen P.K., Kudsk P. (2013). European Perspectives on the Adoption of Nonchemical Weed Management in Reduced-Tillage Systems for Arable Crops. Weed Technol. 27:231-240. EcolDur

  85. Mézière D., Lucas P., Granger S., Colbach N. (2013) Does Integrated Weed Management affect the risk of crop diseases? A simulation case study with blackgrass weeds and take-all disease. Eur. J. Agron. 47:33-43. EcolDur

  86. Mikic A., Smykal P., Kenicer G.J., Vishnyakova M., Sarukhanyan N., Akopian J., Vanyan A., Gabrielyan I., Smykalova I., Sherbakova E., Zoric L., Atlagic J., Zeremski-Skoric T., Cupina B., Krstic D., Jajic I., Antanasovic S., Dordevic V., Mihailovic V., Ivanov A., Ochatt S., Ambrose M. (2013). The bicentenary of the research on 'beautiful' vavilovia (Vavilovia formosa), a legume crop wild relative with taxonomic and agronomic potential. Bot. J. Linnean Soc. 172:524-531. GEAPSI

  87. Molinier V., Murat C., Morin E., Gollotte A., Wipf D., Martin F. (2013). First identification of polymorphic microsatellite markers in the Burgundy truffle, Tuber aestivum (Tuberaceae). APPS. 1:1200220 (4p.). IPM

  88. Molinier V., van Tuinen D., Chevalier G., Gollotte A., Wipf D., Redecker D. (2013). A multigene phylogeny demonstrates that Tuber aestivum and Tuber uncinatum are conspecific. Org. Divers. Evol. 13:503-512. IPM

  89. Molinier V., Bouffaud M.-L., Castel T., Mounier A., Colombet A., Recorbet G., Frochot H., Wipf D. (2013). Monitoring the fate of a 30-year-old truffle orchard in Burgundy: from Tuber melanosporum to Tuber aestivum. Agrofor. Syst. 87:1439-1449. IPM

  90. Monard C., Martin-Laurent F., Lima O., Devers-Lamrani M., Binet F. (2013). Estimating the biodegradation of pesticide in soils by monitoring pesticide-degrading gene expression. Biodegradation. 24:203-213. EcolDur

  91. Monniot C., Boisrame A., Da Costa G., Chauvel M., Sautour M., Bougnoux M.E., Bellon-Fontaine M.N., Dalle F., d'Enfert C., Richard M.L. (2013). Rbt1 Protein Domains Analysis in Candida albicans Brings Insights into Hyphal Surface Modifications and Rbt1 Potential Role during Adhesion and Biofilm Formation. PLoS One. 8:e82395 (17p.). MERS

  92. Moreau D., Milard G., Munier-Jolain N.M. (2013). A plant nitrophily index based on plant leaf area response to soil nitrogen availability. Agron. Sustain. Dev. 33:809-815. EcolDur

  93. Mulder C., Ahrestani F.S., Bahn M., Bohan D.A., Bonkowski M., Griffiths B.S., Guicharnaud R.A., Kattge J., Krogh P.H., Lavorel S., Lewis O.T., Mancinelli G., Naeem S., Peñuelas J., Poorter H., Reich P.B., Rossi L., Rusch G.M., Sardans J., Wright I.J. (2013). Connecting the green and brown worlds: allometric and stoichiometric predictability of above- and below-ground networks. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:69-175. EcolDur

  94. Muller J.M., Simonet A.L., Binois R., Muggeo E., Bugnon P., Liet J., Duong M., Chavanet P., Piroth L. (2013). The Respect of Recommendations Provided in an International Travelers' Medical Service: Far From the Cup to the Lips. J. Travel Med. 20:78-82. MERS

  95. Munier-Jolain N.M., Guyot S.H.M., Colbach N. (2013). A 3D model for light interception in heterogeneous crop: weed canopies: model structure and evaluation. Ecol. Model. 250:101-110. EcolDur

  96. Negrel J., Javelle F., Morandi D. (2013). Detection of a plant enzyme exhibiting chlorogenate-dependant caffeoyltransferase activity in methanolic extracts of arbuscular mycorrhizal tomato roots. Plant Physiol. Biochem. 66:77-83. IPM

  97. Niepceron M., Martin-Laurent F., Crampon M., Portet-Koltalo F., Akpa-Vinceslas M., Legras M., Bru D., Bureau F., Bodilis J. (2013). GammaProteobacteria as a potential bioindicator of a multiple contamination by polycyclic aromatic hydrocarbons (PAHs) in agricultural soils. Environ. Pollut. 180:199-205. EcolDur

  98. Noguero M., Atif R.M., Ochatt S., Thompson R.D. (2013). The role of the DNA-binding One Zinc Finger (DOF) transcription factor family in plants. Plant Sci. 209:32-45. GEAPSI

  99. Ochatt S. (2013). Plant cell electrophysiology: Applications in growth enhancement, somatic hybridisation and gene transfer.Biotech. Adv. 31:1237-1246. GEAPSI

  100. Ochatt S.J., Conreux C., Jacas L. (2013). Flow cytometry distinction between species and between landraces within Lathyrus species and assessment of true-to-typeness of in vitro regenerants. Plant Syst. Evol. 299:75-85. GEAPSI

  101. Ochatt S., Jacas L., Patat-Ochatt E.M., Djenanne S. (2013). Flow cytometric analysis and molecular characterization of Agrobacterium tumefaciens-mediated transformants of Medicago truncatula. Plant Cell Tissue Organ Cult. 113:237-244. GEAPSI

  102. Pascault N., Ranjard L., Kaisermann A., Bachar D., Christen R., Terrat S., Mathieu O., Lévêque J., Mougel C., Hénault C., Lemanceau P., Péan M., Boiry S., Fontaine S., Maron P.A. (2013). Stimulation of different functional groups of bacteria by various plant residues as a driver of soil priming effect. Ecosystems. 16:810-822. EcolDur (GenoSol)

  103. Pesce S., Béguet J., Rouard N., Devers-Lamrani M., Martin-Laurent F. (2013). Response of a diuron-degrading community to diuron exposure assessed by real-time quantitative PCR monitoring of phenylurea hydrolase A and B encoding genes. Appl Microbiol Biotechnol. 97:1661-1668. EcolDur

  104. Pesce S., Margouma C., Rouard N., Foulquier A., Martin-Laurent F. (2013). Freshwater sediment pesticide biodegradation potential as an ecological indicator of microbial recovery following a decrease in chronic pesticide exposure: A case study with the herbicide diuron. Ecol. Indic. 29:18-25. EcolDur

  105. Petit S., Alignier A., Colbach, N., Joannon A., Le Cœur D., Thenail C. (2013). Weed dispersal by farming at various spatial scales. A review. Agron. Sustain. Dev. 33:205-217. EcolDur

  106. Philippot L., Raaijmakers J.M., Lemanceau P., van der Putten W.H. (2013). Going back to the roots: the microbial ecology of the rhizosphere. Nat. Rev. Microbiol. 11:789-799. EcolDur

  107. Philippot L., Spor A., Hénault C., Bru D., Bizouard F., Jones C.M., Sarr A., Maron P.A. (2013). Loss in microbial diversity affects nitrogen cycling in soil. Isme J. 7:1609-1619. EcolDur

  108. Ponge J.F., Pérès G., Guernion M., Ruiz-Camacho N., Cortet J., Pernin C., Villenave C., Chaussod R., Martin-Laurent F., Bispo A., Cluzeau D. (2013). The impact of agricultural practices on soil biota: A regional study. Soil Biol. Biochem. 67:271-284. EcolDur IPM

  109. Quenot J.-P., Luyt C.-E., Roche N., Chalumeau M., Charles P.-E., Claessens Y.-E., Lasocki S., Bedos J.-P., Pean Y., Philippart F., Ruiz S., Gras-Leguen C., Dupuy A.-M., Pugin J., Stahl J.-P., Misset B., Gauzit R., Brun-Buisson C. (2013). Role of biomarkers in the management of antibiotic therapy: an expert panel review II: clinical use of biomarkers for initiation or discontinuation of antibiotic therapy. Annals of intensive care. 3:21 (17p.). MERS

  110. Ranjard L., Dequiedt S., Chemidlin Prévost-Bouré N., Thioulouse J., Saby N., Lelièvre M., Maron P.A., Morin F., Bispo A., Jolivet C., Arrouays D.; Lemanceau P. (2013). Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity. Nat. Commun. 4:1434 (10p.). EcolDur (GenoSol)

  111. Recorbet G., Abdallah C., Renaut J., Wipf D., Dumas-Gaudot E. (2013). Protein actors sustaining arbuscular mycorrhizal symbiosis: underground artists break the silence. New Phytol. 199:26-40. IPM

  112. Redecker D., Schussler A., Stockinger H., Sturmer S.L., Morton J.B., Walker C. (2013). An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota). Mycorrhiza. 23:515-531. IPM

  113. Reynolds A.M., Leprêtre L., Bohan D.A. (2013). Movement patterns of Tenebrio beetles demonstrate empirically that correlated-random-walks have similitude with a Levy walk. Sci Rep. 3:art 3158 (8p.). EcolDur

  114. REX Consortium (Resistance to Xenobiotics Consortium). Members: Bourguet D., Delmotte F., Franck P., Guillemaud T., Reboud X., Vacher C. Walker A.S. (2013) Heterogeneity of selection and the evolution of resistance. Trends Ecol.Evol. 28:110-118. EcolDur

  115. Ricci B., Franck P., Valantin-Morison M., Bohan D.A., Lavigne C. (2013). Do species population parameters and landscape characteristics affect the relationship between local population abundance and surrounding habitat amount? Ecol. Complex. 15:62-70. EcolDur

  116. Robin M.H., Colbach N., Lucas P., Montfort F., Cholez C., Debaeke P., Aubertot J.N. (2013). Injury Profile SIMulator, a Qualitative Aggregative Modelling Framework to Predict Injury Profile as a Function of Cropping Practices, and Abiotic and Biotic Environment. II. Proof of Concept: Design of IPSIM-Wheat-Eyespot. PLoS One. 8:e75829 (13p.). EcolDur

  117. Rochelet M., Vienney F., Solanas S., Membrilla A., Hartmann A. (2013). An electrochemical DNA biosensor for the detection of CTX-M extended-spectrum β-lactamase-producing Escherichia coli in soil samples. J. Microbiol. Methods. 92:153-156. MERS

  118. Sebilo M., Mayer B., Nicolardot B., Pinay G., Mariotti A. (2013). Long-term fate of nitrate fertilizer in agricultural soils. Proc. Natl. Acad. Sci. U. S. A. 110:18185-18189. EcolDur

  119. Sendid B., Ducoroy P., Francois N., Lucchi G., Spinali S., Vagner O., Damiens S., Bonnin A., Poulain D., Dalle F. (2013). Evaluation of MALDI-TOF mass spectrometry for the identification of medically-important yeasts in the clinical laboratories of Dijon and Lille hospitals. Med. Mycol. 51:25-32. MERS

  120. Stewart R.I.A., Dossena M., Bohan D.A., Jeppesen E., Kordas R.L., Ledger M.E., Meerhoff M., Moss B., Mulder C., Shurin J.B., Suttle B., Thompson R., Trimmer M., Woodward G. (2013). Mesocosm experiments as a tool for ecological climate-change research. Adv. Ecol. Res. (special issue: "Global Change in Multispecies Systems") 48:71-181. EcolDur

  121. Tamaddoni-Nezhad A., Milani G.A., Raybould A., Muggleton S., Bohan D.A. (2013). Construction and validation of food webs using logic-based machine learning and text mining. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:225-289. EcolDur

  122. Tisserant E., Malbreil M., Kuo A., Kohler A., Symeonidi A., Balestrini R., Charron P., Duensing N., Frey N.F.D., Gianinazzi-Pearson V., Gilbert L.B., Handa Y., Herr J.R., Hijri M., Koul R., Kawaguchi M., Krajinski F., Lammers P.J., Masclauxm F.G., Murat C., Morin E., Ndikumana S., Pagni M., Petitpierre D., Requena N., Rosikiewicz P., Riley R., Saito K., Clemente H.S., Shapiro H., van Tuinen D., Becard G., Bonfante P., Paszkowski U., Shachar-Hill Y.Y., Tuskan G.A., Young P.W., Sanders I.R., Henrissat B., Rensing S.A., Grigoriev I.V., Corradi N., Roux C., Martin F. (2013). Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proc. Natl. Acad. Sci. U. S. A. 110:20117-20122. IPM EcolDur

  123. Tixier P., Peyrard N., Aubertot J.-N., Gaba S., Radoszycki J., Caron-Lormier G., Vinatier F., Mollot G., Sabbadin R. (2013). Modelling interaction networks for enhanced ecosystem services in agroecosystems. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:437-480. EcolDur

  124. Topp E., Chapman R., Devers-Lamrani M., Hartmann A., Marti R., Martin-Laurent F., Sabourin L., Scott A., Sumarah M. (2013). Accelerated Biodegradation of Veterinary Antibiotics in Agricultural Soil following Long-Term Exposure, and Isolation of a Sulfamethazine-degrading Microbacterium sp. J. Environ. Qual. 42:173-178. EcolDur MERS

  125. Trichard A., Alignier A., Biju-Duval L., Petit S. (2013). The relative effects of local management and landscape context on weed seed predation and carabid functional groups. Basic Appl. Ecol. 14:235-245. EcolDur

  126. Trichard A., Alignier A., Chauvel B., Petit S. (2013). Identification of weed community traits response to conservation agriculture. Agric. Ecosyst. Environ. 179:179-186. EcolDur

  127. Verdier J., Dessaint F., Schneider C., Abirached-Darmency M. (2013). A combined histology and transcriptome analysis unravels novel questions on Medicago truncatula seed coat. J. Exp. Bot. 64:459-470. GEAPSI EcolDur

  128. Veres A., Petit S., Conord C., Lavigne C. (2013). Does landscape composition affect pest abundance and their control by natural enemies? A review. Agric. Ecosyst. Environ. 166:110-117. EcolDur

  129. Vermue A., Philippot L., Munier-Jolain N.M., Hénault C., Nicolardot B. (2013). Influence of integrated weed management system on N-cycling microbial communities and N2O emissions. Plant Soil. 373:501-514. EcolDur

  130. Villard O., Breit L., Cimon B., Franck J., Fricker-Hidalgo H., Godineau N., Houze S., Paris L., Pelloux H., Villena I., Candolfi E., the French National Reference Center for Toxoplasmosis Network: Bonnin A. Dalle F. and al. (2013). Comparison of four commercially available avidity tests for Toxoplasma gondii-Specific IgG antibodies. Clin. Vaccine Immunol. 20:197-204. MERS

  131. Villette S., Piron E., Martin R., Miclet D., Jones G., Paoli J.-N., Gée C. (2013). Estimation of two-dimensional fertiliser mass flow distributions by recording granule impacts. Biosyst. Eng. 115:463-473. EcolDur

  132. Vivant A.-L., Garmyn D., Piveteau P. (2013). Listeria monocytogenes, a down-to-earth pathogen. Front. Cell. Infect. Microbiol. 3:art 87 (10p.). MERS

  133. Vivant A.-L., Garmyn D., Maron P.-A., Nowak V., Piveteau P. (2013). Microbial diversity and structure are drivers of the biological barrier effect against Listeria monocytogenes in soil. PLoS One. 8:e76991 (11p.). MERS EcolDur (GenoSol)

  134. Voisin A.S., Cazenave A.B., Duc G., Salon C. (2013). Pea nodule gradients explain C nutrition and depressed growth phenotype of hypernodulating mutants. Agron. Sustain. Dev. 33:829-838. GEAPSI

  135. Vos C., Schouteden N., van Tuinen D., Chatagnier O., Elsen A., De Waele D., Panis B., Gianinazzi-Pearson V. (2013). Mycorrhiza-induced resistance against the root-knot nematode Meloidogyne incognita involves priming of defense gene responses in tomato. Soil Biol. Biochem. 60:45-54. IPM

  136. Wieder W.R., Cleveland C.C., Taylor P.G., Nemergut D.R., Hinckley E.-L., Philippot L., Bru D., Weintraub S.R., Martin M., Townsend A.R. (2013). Experimental removal and addition of leaf litter inputs reduces nitrate production and loss in a lowland tropical forest. Biogeochemistry. 113:629-642. EcolDur

  137. Zancarini A., Mougel C., Terrat S., Salon C., Munier-Jolain N. (2013). Combining ecophysiological and microbial ecological approaches to study the relationship between Medicago truncatula genotypes and their associated rhizosphere bacterial communities. Plant Soil. 365:183-199. EcolDur GEAPSI (GenoSol)

  138. Zuber H., Poignavent G., Le Signor C., Aimé D., Vieren E., Tadla C., Lugan R., Belghazi M., Labas V., Santoni A.-L., Wipf D., Buitink J., Avice J.C., Salon C., Gallardo K. (2013). Legume adaptation to sulfur deficiency revealed by comparing nutrient allocation and seed traits in Medicago truncatula. Plant J. 76:982-996. GEAPSI IPM
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