I. Liste des productions de l’umr 1347 Agroécologie Articles dans des revues internationales ou nationales avec comité de lecture

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titreI. Liste des productions de l’umr 1347 Agroécologie Articles dans des revues internationales ou nationales avec comité de lecture
date de publication07.10.2017
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I.Liste des productions de l’UMR 1347 Agroécologie

  1. Articles dans des revues internationales ou nationales avec comité de lecture

Acceptés pour publication

  1. Bohan D.A., Landuyt D., Ma A., Macfadyen S., Martinet V., Massol F., McInerny G., Montoya J.M., Mulder C., Pascual U., Pocock M.J.O., White P., Blanchemanche S., Bonkowski M., Bretagnolle V., Brönmark C., Dicks L., Dumbrell A., Friberg N., Gessner M.O., Gill R.J., Haughton A.J., Ibanez S., Jensen J., Jeppesen E., Jokela J., Lacroix G., Lannou C., Lavorel S., Le Galliard J.-F., Lescourret F., Liu S., Loeuille N., McLaughlin O., Muggleton S., Peñuelas J., Petanidou T., Petit S., Pomati F., Raffaelli D., Rasmussen J., Raybould A., Reboud X., Richard G., Scherber C., Scheu S., Sutherland W.J., Tamaddoni-Nezhad A., ter Braak C., Termansen M., Thompson M.S.A., Tscharntke T., Vacher C., van der Geest H., Voigt W., Vonk J.A., Yu D.W., Zhou X., Woodward G. Networking our way to better ecosystem service provision. Trends Ecol. Evol., accepté. EcolDur

  2. Fernandez-Aparicio M., Gibot-Leclerc S., Reboud X. Broomrape weeds. Underground mechanisms of parasitism and associated strategies for their control: a review. Front. Plant Sci., accepté. EcolDur

  3. Gerbeau-Pissot P., Der C., Grebe M., Stanislas T. Ratiometric fluorescence live imaging analysis of membrane lipid order in Arabidopsis mitotic cells using a lipid order-sensitive probe. Meth. Mol. Biol., accepté. IPM

  4. Karlsson I., Edel-Hermann V., Gautheron N., Brandström Durling M., Kolseth A.-K., Steinberg C., Persson P., Friberg H. Evaluation of genus-specific primers for studying Fusarium communities in field samples. Appl. Environ. Microbiol., accepté. IPM

  5. Lecomte C., Edel-Hermann V., Cannesan M.-A., Gautheron N., Langlois A., Alabouvette C., Robert R., Steinberg C. Fusarium oxysporum f. sp. cyclaminis: underestimated genetic diversity. Eur. J. Plant Pathol., accepté. IPM

  6. Tayeh N., Aluome C., Falque M., Jacquin F., Klein A., Chauveau A., Bérard A., Houtin H., Rond C., Kreplak J., Boucherot K., Martin C., Baranger A., Pilet-Nayel M.-L., Warkentin T.D., Brunel D., Marget P., Le Paslier M.-C., Aubert G., Burstin J. The GenoPea 13.2K SNP Array enables a high density and resolution consensus genetic map. Plant J., accepté. GEAPSI

  7. Vivant A.-L., Garmyn D., Gal L., Hartmann A., Piveteau P. Survival of Listeria monocytogenes in soil requires AgrA-mediated regulation. Appl. Environ. Microbiol., accepté. MERS

Sous presse

  1. Albac S., Schmitz A., Lopez-Alayon C., d’Enfert C., Sautour M., Ducreux A., Labruère-Chazal C., Laue M., Holland G., Bonnin A., Dalle F. Candida albicans is able to use M cells as a portal of entry across the intestinal barrier in vitro. Cell Microbiol., sous presse. MERS

  2. Ba A., Hafidi M., Qaddoury A., Duponnois R., Wipf D., Hijri M. International Congress on Mycorrhizae: mycorrhizal symbiosis a key factor for improving plant productivity and ecosystems restoration. Mycorrhiza, sous presse. IPM

  3. Bell A., Moreau C., Chinoy C., Spanner R., Dalmais M., Le Signor C., Bendahmane A., Klenell M., Domoney C. SGRL can regulate chlorophyll metabolism and contributes to normal plant growth and development in Pisum sativum L. Plant Mol. Biol., sous presse. GEAPSI

  4. Bretagnole F., Matejicek A., Grégoire S., Reboud X., Gaba S. Determination of fatty acids content, global antioxidant activity and energy value of weed seeds from farmland in France. Weed Res., sous presse. EcolDur

  5. Creamer R.E., Hannula S.E., Van Leeuwen J.P., Stone D., Rutgers M., Schmelz R.M., de Ruiter P.C., Bohse Hendriksen N., Bolger T., Bouffaud M.L., Buée M., Carvalho F., Costa D., Dirilgen T., Francisco R., Griffiths B.S., Griffiths R., Martin F., Martins da Silva P., Mendes S., Morais P.V., Pereira C., Philippot L., Plassart P., Redecker D., Römbke J., Sousa J.P., Wouterse M., Lemanceau P. Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe. Appl. Soil Ecol. Special Issue: Soil Biodiversity, sous presse. EcolDur IPM

  6. Crouzet O., Poly F., Bonnemoy F., Bru D., Batisson I., Bohatier J., Philippot L., Mallet C. Functional and structural responses of soil N-cycling microbial communities to the herbicide mesotrione: a dose-effect microcosm approach. Environ. Sci. Pollut. Res., sous presse. EcolDur

  7. Délye C., Causse R., Michel S. Genetic basis, evolutionary origin and spread of resistance to acetolactate synthase (ALS) inhibiting herbicides in common groundsel (Senecio vulgaris). Pest Manag. Sci., sous presse. GEAPSI

  8. Griffiths R.I., Thompson B.C., Plassart P., Hyun G., Stone D., Creamer R.E., Lemanceau P., Bailey M.J. Mapping and validating predictions of bacterial biodiversity using European and national scale datasets. Appl. Soil Ecol. Special Issue: Soil Biodiversity, sous presse. EcolDur

  9. Haughton A.J., Bohan D.A., Clark S.J., Mallott M.D., Mallott V., Sage R., Angela K. Dedicated biomass crops can enhance biodiversity in the arable landscape. GCB Bioenergy, sous presse. EcolDur

  10. Johnson J.-M., Houngnandan P., Kane A., Chatagnier O., Sanon K., Neyra M., van Tuinen D. Colonization and molecular diversity of arbuscular mycorrhizal fungi associated with the rhizosphere of cowpea (Vigna unguiculata (L.) Walp.) in Benin (West Africa): an exploratory study. Ann. Microbiol., sous presse. IPM

  11. Koyyappurath S., Atuahiva T., Le Guen R., Batina H., Le Squin S., Gautheron N., Edel-Hermann V., Peribe J., Jahiel M., Steinberg C., Liew E.C.Y., Alabouvette C., Besse P., Dron M., Sache Y., Laval V., Grisoni M. Fusarium oxysporum f. sp. radicis-vanillae is the causal agent of the root and stem disease of vanilla worldwide. Plant Pathol, sous presse. IPM

  12. Labruyère S., Bohan D.A., Biju-Duval L., Ricci B., Petit S. Local, neighbor and landscape effects on the abundance of weed seed-eating carabids in arable fields: A nationwide analysis. Basic Appl. Ecol., sous presse. EcolDur

  13. Lemanceau P., Creamer R.E., Griffiths B.S. Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties. Appl. Soil Ecol. Special Issue: Soil Biodiversity, sous presse. EcolDur

  14. Paris F., Krzyżaniak Y., Gauvrit C., Jamois F., Domergue F., Joubès J., Ferrières V., Adrian M., Legentil L., Daire X., Trouvelot S. An ethoxylated surfactant enhances the penetration of the sulfated laminarin through leaf cuticle and stomata, leading to increased induced resistance against grapevine downy mildew. Physiol. Plant., sous presse. IPM EcolDur

  15. Peyret-Guzzon M., Stockinger H., Bouffaud M.-L., Farcy P., Wipf D., Redecker D. Arbuscular mycorrhizal fungal communities and Rhizophagus irregularis populations shift in response to short term ploughing and fertilisation in a buffer strip. Mycorrhiza, sous presse. IPM

  16. Prudent M., Vernoud V., Girodet S., Salon C. How nitrogen fixation is modulated in response to different water availability levels and during recovery: A structural and functional study at the whole plant level. Plant Soil, sous presse. GEAPSI

  17. Sagarkar S., Bhardwaj P., Storck V., Devers-Lamrani M., Martin-Laurent F., Kapley A. S-triazine degrading bacterial isolate Arthrobacter sp. AK-YN10, a candidate for bioaugmentation of atrazine contaminated soil. Appl. Microbiol. Biotechnol, sous presse. EcolDur

  18. Stone D., Blomkvist P., Bohse Hendriksen N., Bonkowski M., Bracht Jørgensen H., Carvalho F., Dunbar M.B., Gardi C., Geisen S., Griffiths R., Hug A.S., Jensen J., Laudon H., Mendes S., Morais P.V., Orgiazzi A., Plassart P., Römbke J., Rutgers M., Schmelz R.M., Sousa J.P., Steenbergen E., Suhadolc M., Winding A., Zupan M., Lemanceau P., Creamer R.E. A method of establishing a transect for biodiversity and ecosystem function monitoring across Europe. Appl. Soil Ecol. Special Issue: Soil Biodiversity, sous presse. EcolDur

  19. Veloso J., Alabouvette C., Olivain C., Flors V., Pastor V., Garcia T., Diaz J. Modes of action of the protective strain Fo47 in controlling verticillium wilt of pepper. Plant Pathol., sous presse. IPM

  20. Webb A., Cottage A., Wood T., Khamassi K., Hobbs D., Gostkiewicz K., White M., Khazaei H., Ali M., Street D., Duc G., Stoddard F., Maalouf F., Ogbonnaya F.C., Link W., Thomas J., O’Sullivan. D M. SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.). Plant Biotechnol. J., sous presse. GEAPSI


  1. Darmency H., Bellanger S., Matejicek A., Guillemin J.-P. (2016). Long-day-dependent segetal species threatened by climate change. Agric. Ecosyst. Environ. 216:340-343. GEAPSI EcolDur

  2. Legay N., Grassein F., Binet M.-N., Arnoldi C., Personeni E., Perigon S., Poly F., Pommier T., Puissant J., Clément J.C., Lavorel S., Mouhamadou B. (2016). Plant species identities and fertilization influence on arbuscular mycorrhizal fungal colonisation and soil bacterial activities. Appl. Soil Ecol. 98:132-139. IPM

  3. Ugarte Nano C., Nicolardot B., Quinche M., Munier-Jolain N., Ubertosi M. (2016). Effects of integrated weed management based cropping systems on the water retention of a silty clay loam soil. Soil Tillage Res. 156:74-82. EcolDur


  1. Alves-Carvalho S., Aubert G., Carrère S., Cruaud C., Brochot A.-L., Jacquin F., Klein A., Martin C., Boucherot K., Kreplak J., da Silva C., Moreau S., Gamas P., Wincker P., Gouzy J., Burstin J. (2015) Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species. Plant J. 84:1-19. GEAPSI

  2. Aouadi N., Aubertot J.-N., Caneill J., Munier-Jolain N.M. (2015). Analyzing the impact of the farming context and environmental factors on cropping systems: a regional case study in Burgundy. Eur. J. Agron. 66:21-29. EcolDur

  3. Avelange-Macherel M.-H., Payet N., Lalanne D., Neveu M., Tolleter D., Burstin J., Macherel D. (2015). Variability within a pea core collection of LEAM and HSP22, two mitochondrial seed proteins involved in stress tolerance. Plant Cell Environ. 38:1299-1311. GEAPSI

  4. Badenhausser I., Gross N., Cordeau S., Bruneteau L., Vandier M. (2015). Enhancing grasshopper (Orthoptera: Acrididae) communities in sown margin strips: the role of plant diversity and identity. Arthropod-Plant Interact. 9:333-346. EcolDur

  5. Barnard R.L., Osborne C.A., Firestone M.K. (2015). Changing precipitation pattern alters soil microbial community response to wet-up under a Mediterranean-type climate. Isme J. 9:946-957. EcolDur

  6. Beaune D., Bretagnolle F., Bollache L., Hohmann G., Fruth B. (2015). Can fruiting plants control animal behaviour and seed dispersal distance? Behaviour. 152:359-374. MERS

  7. Bécel C., Munier-Jolain N.M., Nicolardot B. (2015). Assessing nitrate leaching in cropping systems based on integratedweed management using the STICS soil–crop model. Eur. J. Agron. 62:46-54. EcolDur

  8. Bediaf H., Sabre R., Journaux L., Cointault F. (2015). Comparison of leaf surface roughness analysis methods by sensitivity to noise analysis. Biosyst. Eng. 136:77-86. GEAPSI

  9. Bellanger S., Touzeau S., Guillemin J.-P., Darmency H. (2015). Variation of inbreeding depression in Centaurea cyanus L., a self-incompatible species. Flora. 212:24-29. EcolDur GEAPSI

  10. Borgy B., Reboud X., Peyrard N., Sabbadin R., Gaba S. (2015). Dynamics of weeds in the soil seed bank: a hidden markov model to estimate life history traits from standing plant time series. PLoS One. 10: e0139278 (15p.). EcolDur

  11. Bourgeois E., Dequiedt S., Lelièvre M., Van Oort F., Lamy I., Ranjard L., Maron P.-A. (2015). Miscanthus bioenergy crop stimulates nutrient-cycler bacteria and fungi in wastewater-contaminated agricultural soil. Environ. Chem. Lett. 13:503-511. EcolDur (GenoSol)

  12. Bourgeois E., Dequiedt S., Lelièvre M., Van Oort F., Lamy I., Maron P.-A., Ranjard L. (2015). Positive effect of the Miscanthus bioenergy crop on microbial diversity in wastewater-contaminated soil. Environ. Chem. Lett. 13:495-501. EcolDur (GenoSol)

  13. Bretagnolle V., Gaba S. Weeds for bees? A review. (2015). Agron. Sustain. Dev. 35:891-909. EcolDur

  14. Bürger J., Darmency H., Granger S., Guyot S.H.M., Messéan A., Colbach N. (2015). Simulation study of the impact of changed cropping practices in conventional and GM maize on weeds and associated biodiversity. Agric. Syst. 137:51-63. EcolDur GEAPSI

  15. Burstin J., Salloignon P., Chabert-Martinello M., Magnin-Robert J.-B., Siol M., Jacquin F., Chauveau A., Pont C., Aubert G., Delaitre C., Truntzer C., Duc G. (2015). Genetic diversity and trait genomic prediction in a pea diversity panel. BMC genomics. 16:art 105 (17p.). GEAPSI

  16. Chalal M., Wincker J.B., Gourrat K., Trouvelot S., Adrian M., Schnitzler J.-P., Jamois F., Daire X. (2015). Sesquiterpene VOCs are markers of elicitation by sulfated laminarine in grapevine. Front. Plant Sci. 6:art 350 (9p.). IPM

  17. Cimmino A., Fernandez-Aparicio M., Avolio F., Yoneyama K., Rubiales D., Evidente A. (2015). Ryecyanatines A and B and ryecarbonitrilines A and B, substituted cyanatophenol, cyanatobenzo 1,3 dioxole, and benzo 1,3 dioxolecarbonitriles from rye (Secale cereale L.) root exudates: Novel metabolites with allelopathic activity on Orobanche seed germination and radicle growth. Phytochemistry. 109:57-65. EcolDur

  18. Clemente A., Arques M.C., Dalmais M., Le Signor C., Chinoy C., Olias R., Rayner T., Isaac P.G., Lawson D.M., Bendahmane A., Domoney C. (2015). Eliminating Anti-Nutritional Plant Food Proteins: The Case of Seed Protease Inhibitors in Pea. PLoS One. 10:e0134634 (24p.).

  1. Constancias F., Saby N.P.A., Terrat S., Dequiedt S., Horrigue W., Nowak V., Guillemin J.P., Biju-Duval L., Prévost-Bouré N.C., Ranjard L. (2015). Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape. MicrobiologyOpen. 4:518-531. EcolDur IPM (GenoSol)

  2. Constancias F., Terrat S., Saby N.P.A., Horrigue W., Villerd J., Guillemin J.P., Biju-Duval L., Nowak V., Dequiedt S., Ranjard L., Prévost-Bouré N.C. (2015). Mapping and determinism of soil microbial community distribution across an agricultural landscape. MicrobiologyOpen. 4:505-517. EcolDur IPM (GenoSol)

  3. Cool S., Pieters J.G., Mertens K.C., Mora S., Cointault F., Dubois J., van de Gucht T., Vangeyte J. (2015). Development of a High Irradiance LED Configuration for Small Field of View Motion Estimation of Fertilizer Particles. Sensors. 15:28627-28645. GEAPSI

  4. Corbel S., Bouaicha N., Martin-Laurent F., Crouzet O., Mougin C. (2015). Soil irrigation with toxic cyanobacterial microcystins increases soil nitrification potential. Environ. Chem. Lett. 13:459-463. EcolDur

  5. Corbel S., Mougin C., Martin-Laurent F., Crouzet O., Bru D., Nelieu S., Bouaicha N. (2015). Evaluation of phytotoxicity and ecotoxicity potentials of a cyanobacterial extract containing microcystins under realistic environmental concentrations and in a soil-plant system. Chemosphere. 128:332-340. EcolDur

  6. Cordeau S., Guillemin J.-P., Reibel C., Chauvel B. (2015). Weed species differ in their ability to emerge in no-till systems that include cover crops. Ann. Appl. Biol. 166:444-455. EcolDur

  7. Coursol S., Fromentin J., Noirot E., Brière C., Robert F., Morel J., Liang Y.-K., Lherminier J., Simon-Plas F. (2015). Long-chain bases and their phosphorylated derivatives differentially regulate cryptogein-induced production of reactive oxygen species in tobacco (Nicotiana tabacum) BY-2 cells. New Phytol. 205:1239-1249. IPM

  8. Courty P.E., Smith P., Koegel S., Redecker D., Wipf D. (2015). Inorganic nitrogen uptake and transport in beneficial plant root-microbe interactions. Crit. Rev. Plant Sci. 34:4-16. IPM

  9. Dages C., Samouelian A., Negro S., Storck V., Huttel O., Voltz M. (2015). Seepage patterns of Diuron in a ditch bed during a sequence of flood events. Sci. Total Environ. 537:120-128. EcolDur

  10. Dananché C., Cassier P., Sautour M., Gautheron N., Wegrzyn J., Perraud M., Bienvenu A.-L., Nicolle M.-C., Boibieux A., Vanhems P. (2015). Fungaemia caused by Fusarium proliferatum in a patient without definite immunodeficiency. Mycopathologia. 179:135-140. MERS IPM

  11. Darmency H., Menchari Y., Le Corre V., Délye C. (2015). Fitness cost due to herbicide resistance may trigger genetic background evolution. Evolution. 69:271-278. GEAPSI

  12. Délye C., Causse R., Gauthier V., Poncet C., Michel S. (2015). Using next-generation sequencing to detect mutations endowing resistance to pesticides: application to acetolactate-synthase (ALS)-based resistance in barnyardgrass, a polyploid grass weed. Pest Manag. Sci. 71:671-685. GEAPSI

  13. Délye C., Duhoux A., Pernin F., Riggins C.W., Tranel P.J. (2015). Molecular mechanisms of herbicide resistance. Weed Sci. (special issue: Research methods in weed science) 1:91-115. GEAPSI

  14. Dhieb C., Normand A.C., L'Ollivier C., Gautier M., Vranckx K., El Euch D., Chaker E., Hendrickx M., Dalle F., Sadfi N., Piarroux R., Ranque S. (2015). Comparison of MALDI-TOF mass spectra with microsatellite length polymorphisms in Candida albicans. J. Mass Spectrom. 50:371-377. MERS

  15. Domeignoz-Horta L., Spor A., Bru D., Breuil M.-C., Bizouard F., Léonard J., Philippot L. (2015). The diversity of the N2O reducers matters for the N2O:N2 denitrification end-product ratio across cropping and annual and a perennial systems. Front. Microbiol. 6:971 (10p.). EcolDur

  16. Duc G., Agrama H., Bao S., Berger J., Bourion V., De Ron A.M., Gowda C.L.L., Mikic A., Millot D., Singh K.B., Tullu A., Vandenberg A., Patto M.C.V., Warkentin T.D., Zong X. (2015). Breeding Annual Grain Legumes for Sustainable Agriculture: New Methods to Approach Complex Traits and Target New Cultivar Ideotypes. Crit. Rev. Plant Sci. 34:381-411. GEAPSI SAR CICAP

  17. Duhoux A., Carrère S., Gouzy J., Bonin L., Délye C. (2015). RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance. Plant Mol. Biol. 87:473-487. GEAPSI

  18. Duru M., Jouany C., Theau J.-P., Granger S., Cruz P. (2015). A plant-functional-type approach tailored for stakeholders involved in field studies to predict forage services and plant biodiversity provided by grasslands. Grass Forage Sci. 70:2-18. EcolDur

  19. Edel-Hermann V., Gautheron N., Mounier A., Steinberg C. (2015). Fusarium diversity in soil using a specific molecular approach and a cultural approach. J. Microbiol. Methods. 111:64-71. IPM

  20. Eraud C., Cadet E., Powolny T., Gaba S., Bretagnolle F., Bretagnolle V. (2015). Weed seeds, not grain, contribute to the diet of wintering skylarks in arable farmlands of Western France. Eur J Wildl Res. 61:151-161. EcolDur

  21. Essl F., Biró K., Brandes D., Broennimann O., Bullock J.M., Chapman D.S., Chauvel B., Dullinger S., Fumanal B., Guisan A., Karrer G., Kazinczi G., Kueffer C., Laitung B., Lavoie C., Leitner M., Mang T., Moser D., Müller-Schärer H., Petitpierre B., Richter R., Schaffner U., Smith M., Starfinger U., Vautard R., Vogl G., von der Lippe M., Follak S. Biological Flora of the British Isles: Ambrosia artemisiifolia. J. Ecol. 103:1069-1098. EcolDur

  22. Fernandez P., Gauvrit C., Barro F., Menendez J., De Prado R. (2015). First case of glyphosate resistance in France. Agron. Sustain. Dev. 35:1469-1476. EcolDur

  23. Filisetti D., Sterkers Y., Brenier-Pinchart M.-P., Cassaing S., Dalle F., Delhaes L., Pelloux H., Touafek F., Varlet-Marie E., Yera H., Candolfi E., Bastien P. (2015). Multicentric comparative assessment of the bio-evolution Toxoplasma gondii detection kit with eight laboratory-developed PCR assays for molecular diagnosis of congenital toxoplasmosis. J. Clin. Microbiol. 53:29-34. MERS

  24. Fried G., Chauvel B., Reboud X. (2015). Weed flora shifts and specialisation in winter oilseed rape in France. Weed Res. 55:514-524. EcolDur

  25. Gaba S., Lescourret F., Boudsocq S., Enjalbert J., Hinsinger P., Journet E.-P., Navas M.-L., Wery J., Louarn G., Malézieux E., Pelzer E., Prudent M., Ozier-Lafontaine H. (2015). Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design. Agron. Sustain. Dev. 35:607-623. EcolDur GEAPSI

  26. Galipaud M., Bollache L., Oughadou A., Dechaume-Moncharmont F.X. (2015). Males do not always switch females when presented with a better reproductive option. Behav. Ecol. 26:359–366. MERS

  27. Galipaud M., Bollache L., Wattier R., Dubreuil C., Dechaume-Moncharmont F.-X., Lagrue C. (2015). Overestimation of the strength of size-assortative pairing in taxa with cryptic diversity: a case of Simpson's paradox. Anim. Behav. 102:217-221. MERS

  28. Gamm M., Adrian M., Heloir M.-C. (2015). Trehalose and trehalose-6-phosphate induce stomatl movements and interfere with ABA-induced stomatal closure in grapevine J. Int. Sci. Vigne Vin. 49:165-171. IPM

  29. Gardarin A., Colbach N. (2015). How much of seed dormancy in weeds can be related to seed traits? Weed Res. 55:14-25. EcolDur

  30. Gardin J.A.C., Gouzy J., Carrère S., Délye C. (2015). ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass). BMC genomics. 16:590-612. GEAPSI

  31. Gibot-Leclerc S., Reibel C., Le Corre V., Dessaint F. (2015) Unexpected fast development of branched broomrape on slow-growing Brassicaceae. . Agron. Sustain. Dev. 35:151-156. EcolDur GEAPSI

  32. Grosjean K., Mongrand S., Beney L., Simon-Plas F., Gerbeau-Pissot P. (2015). Differential effect of plant lipids on membrane organization: specificities of phytosphingolipids and phytosterols. J. Biol. Chem. 290:5810-5825. IPM

  33. Guigue J., Leveque J., Mathieu O., Schmitt-Kopplin P., Lucio M., Arrouays D., Jolivet C., Dequiedt S., Prévost-Bouré N.C., Ranjard L. (2015). Water-extractable organic matter linked to soil physico-chemistry and microbiology, at the regional scale. Soil Biol. Biochem. 84:158-167. EcolDur (GenoSol)

  34. Guilbaud M., Piveteau P., Desvaux M., Brisse S., Briandet R. (2015). Exploring the diversity of Listeria monocytogenes biofilm architecture by high-throughput confocal laser scanning microscopy: predominance of honey-comb-like morphotype. Appl. Environ. Microbiol. 81:1813-1819. MERS

  35. Guillier C., Gamm M., Lucchi G., Truntzer C., Pecqueur D., Ducoroy P., Adrian M., Heloir M.-C. Towards the identification of two glycoproteins involved in the stomatal deregulation of downy mildew infected grapevine leaves. Mol. Plant-Microbe Interact. 28:1227-1246. IPM

  36. Gutjahr C., Sawers R.J.H., Marti G., Andrés-Hernández L., Yang S.-Y., Casieri L., Angliker H., Oakeley E.J., Wolfender J.-L., Abreu-Goodger C., Paszkowski U. (2015). Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi. Proc. Natl. Acad. Sci. U. S. A. 112:6754-6759. IPM

  37. Henckel L., Börger L., Meiss H., Gaba S., Bretagnolle V. (2015). Organic fields sustain weed metacommunity dynamics in farmland landscapes. Proc. R. Soc. B-Biol. Sci. 282:art 20150002. EcolDur

  38. Humbert C., Aimé S., Alabouvette C., Steinberg C., Olivain C. (2015). Remodeling of actin cytoskeleton in tomato cells in response to inoculation with a biocontrol strain of Fusarium oxysporum in comparison to a pathogenic strain. Plant Pathol. 64:1366-1374. IPM

  39. Hussain S., Arshad M., Springael D., Sørensen S.R., Bending G.D., Devers-Lamrani M., Maqbool Z., Martin-Laurent F. Abiotic and biotic processes governing the fate of phenylurea herbicides in soils: a review. Crit. Rev. Environ. Sci. Technol. 45:1947-1998. EcolDur

  40. Husson C., Aguayo J., Revellin C., Frey P., Loos R., Marçais B. (2015). Evidence for homoploid speciation in Phytophthora alni supports taxonomic reclassification in this species complex. Fungal Genet. Biol. 77:12-21. MERS

  41. Kanold J.M., Guichard N., Immel F., Plasseraud L., Corneillat M., Alcaraz G., Brummer F., Marin F. (2015). Spine and test skeletal matrices of the Mediterranean sea urchin Arbacia lixula - a comparative characterization of their sugar signature. Febs J. 282:1891-1905. IPM

  42. Kelloniemi J., Trouvelot S., Heloir M.-C., Simon A., Dalmais B., Frettinger P., Cimerman A., Fermaud M., Roudet J., Baulande S., Bruel C., Choquer M., Couvelard L., Duthieuw M., Ferrarini A., Flors V., Le Pecheur P., Loisel E., Morgant G., Poussereau N., Pradier J.-M., Rascle C., Tdra L., Poinssot B., Viaud M. (2015). Analysis of the molecular dialogue between gray mold (Botrytis cinerea) and grapevine (Vitis vinifera) reveals a clear shift in defense mechanisms during berry ripening. Mol. Plant-Microbe Interact. 28:1167-1180. IPM

  43. Koprdova S., Bellanger S., Skuhrovec J., Darmency H. (2015). Does gall midge larvae cause pre-dispersal seed mortality and limit cornflower population growth? Acta Oecol.-Int. J. Ecol. 69:167-172. GEAPSI

  44. Kulik A., Noirot E., Grandperret V., Bourque S., Fromentin J., Salloignon P., Truntzer C., Dobrowolska G., Simon-Plas F., Wendehenne D. (2015). Interplays between nitric oxide and reactive oxygen species in cryptogein signalling. Plant Cell Environ. 38:331-348. IPM

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  47. Lemaître J.-P., Duroux A., Pimpie R., Duez J.-M., Milat M.-L. (2015). Listeria phage and phage tail induction triggered by components of bacterial-growth media (phosphate, LiCl, nalidixic acid and acriflavine). Appl. Environ. Microbiol. 81:2117-2124. MERS

  48. Lemanceau P., Maron P.-A., Mazurier S., Mougel C., Pivato B., Plassart P., Ranjard L., Revellin C., Tardy V., Wipf D. (2015). Understanding and managing soil biodiversity: a major challenge in agroecology. Agron. Sustain. Dev. 35:67-81. EcolDur MERS IPM

  49. Léonard L., Beji O., Arnould C., Noirot E., Bonnotte A., Gharsallaoui A., Degraeve P., Lherminier J., Saurel R., Oulahal N. (2015). Preservation of viability and anti-Listeria activity of lactic acid bacteria, Lactococcus lactis and Lactobacillus paracasei, entrapped in gelling matrices of alginate or alginate/caseinate. Food Control. 47:7-19. IPM

  50. Liu Y.-B., Darmency H., Stewart C.N.J., Di K., Wei W., Tang Z.X., Ma K.-P. (2015). The effect of Bt-transgene introgression on plant growth and reproduction in wild Brassica juncea. Transgenic Res. 24:537-547. GEAPSI

  51. Louarn G., Pereira-Lopès E., Fustec J., Mary B., Voisin A.S., de Faccio Carvalho P.C., Gastal F. (2015). The amounts and dynamics of nitrogen transfer to grasses differ in alfalfa and white clover-based grass-legume mixtures as a result of rooting strategies and rhizodeposit quality. Plant Soil. 389:289–305. GEAPSI

  52. Maeda K., Spor A., Edel-Hermann V., Heraud C., Breuil M.-C., Bizouard F., Toyoda S., Yoshida N., Steinberg C., Philippot L. (2015). N2O production, a widespread trait in fungi. Sci. Rep. 5:9697 (7p.). EcolDur IPM

  53. Maillard A., Diquélou S., Billard V., Lainé P., Garnica M., Prudent M., Garcia-Mina J.-M., Yvin J.-C., Ourry A. (2015). Leaf mineral nutrient remobilization during leaf senescence and modulation by nutrient deficiency. Front. Plant Sci. 6:art 317. GEAPSI

  54. Mamy L., Patureau D., Barriuso E., Bedos C., Bessac F., Louchart X., Martin-Laurent F., Miege C., Benoit P. (2015). Prediction of the fate of organic compounds in the environment from their molecular properties: a review. Crit. Rev. Environ. Sci. Technol. 45:1277-1377. EcolDur

  55. Manasfi T., Storck V., Ravier S., Demelas C., Coulomb B., Boudenne J.-L. (2015). Degradation Products of Benzophenone-3 in Chlorinated Seawater Swimming Pools. Environ. Sci. Technol. 49:9308-9316. EcolDu

  56. Mazurier S., Merieau A., Bergeau D., Decoin V., Sperandio D., Crépin A., Barbey C., Jeannot K., Vicré-Gibouin M., Plésiat P., Lemanceau P., Latour X. (2015). Type III secretion system and virulence markers highlight similarities and differences between human- and plant-associated pseudomonads related to Pseudomonas fluorescens and putida. Appl. Environ. Microbiol. 81:2579-2590. EcolDur

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  58. Mézière D., Petit S., Granger S., Biju-Duval L., Colbach N. (2015). Developing a set of simulation-based indicators to assess harmfulness and contribution to biodiversity of weed communities in cropping systems. Ecol. Indic. 48:157-170. EcolDur

  59. Milne E., Banwart S.A., Noellemeyer E., Abson D.J., Ballabio C., Bampa F., Bationo A., Batjes N.H., Bernoux M., Bhattacharyya T., Black H., Buschiazzo D.E., Cai Z., Cerri C.E., Cheng K., Compagnone C., Conant R., Coutinho H.L.C., de Brogniez D., Balieiro F.d.C., Duffy C., Feller C., Fidalgo E.C.C., da Silva C.F., Funk R., Gaudig G., Gicheru P.T., Goldhaber M., Gottschalk P., Goulet F., Goverse T., Grathwohl P., Joosten H., Kamoni P.T., Kihara J., Krawczynski R., La Scala Jr N., Lemanceau P., Li L., Li Z., Lugato E., Maron P.-A., Martius C., Melillo J., Montanarella L., Nikolaidis N., Nziguheba G., Pan G., Pascual U., Paustian K., Piñeiro G., Powlson D., Quiroga A., Richter D., Sigwalt A., Six J., Smith J., Smith P., Stocking M., Tanneberger F., Termansen M., van Noordwijk M., van Wesemael B., Vargas R., Victoria R.L., Waswa B., Werner D., Wichmann S., Wichtmann W., Zhang X., Zhao Y., Zheng J., Zheng J. (2015). Soil carbon, multiple benefits. Environmental Development. 13:33-38. EcolDur

  60. Molinier V., Murat C., Frochot H., Wipf D., Spivallo R. (2015). Fine-scale spatial genetic structure analysis of the black truffle Tuber aestivum and its link to aroma variability. Environ. Microbiol. Rep. 17:3039-3050. IPM

  61. Molinier V., Murat C., Peter M., Gollotte A., De la Varga H., Meier B., Egli S., Belfiori B., Paolocci F, Wipf D. (2015). SSR- based identification of genetic groups within European populations of Tuber aestivum Vittad. Mycorrhiza. 17:3039-3050. IPM

  62. Moreau D., Pivato B., Bru D., Busset H., Deau F., Faivre C., Matejicek A., Strbik F., Philippot L., Mougel C. (2015). Plant traits related to nitrogen uptake influence plant-microbe competition. Ecology. 96:2300-2310. EcolDur (GenoSol)

  63. Mougin C., Azam D., Caquet T., Cheviron N., Dequiedt S., Le Galliard J.-F., Olivier G., Houot S., Lacroix G., Lafolie F., Maron P.-A., Michniewicz R., Pichot C., Ranjard L., Roy J., Zeller B., Clobert J., Chanzy A. (2015). A coordinated set of ecosystem research platforms open to international research in ecotoxicology, AnaEE-France. Environ. Sci. Pollut. Res. . 22:16215-16228. EcolDur (GenoSol)

  64. Noguero M., Le Signor C., Vernoud V., Bandyopadhyay K., Sanchez M., Fu C., Aubert G., Torres-Jerez I., Wen J., Mysore K.S., Gallardo K., Udvardi M., Thompson R., Verdier J. (2015). DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasis. Plant J. 81:453-466. GEAPSI

  65. Ochatt S.J. (2015). Agroecological impact of an in vitro biotechnology approach of embryo development and seed filling in legumes. Agron. Sustain. Dev. 35:535-552. GEAPSI

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  67. Pascual U., Termansend M., Hedlunde K., Brussaardf L., Faberg J.H., Foudia S., Lemanceau P., Jørgensend S.L. (2015). On the value of soil biodiversity and ecosystem services. Ecosystem Services. 15:11-18. EcolDur

  68. Perronne R., Le Corre V., Bretagnolle V., Gaba S. (2015) Stochastic processes and crop types shape weed community assembly in arable fields. J. Veg. Sci. 26:348-359. EcolDur GEAPSI

  69. Petit C., Arnal H., Darmency H. (2015). Effects of fragmentation and population size on the genetic diversity of Centaurea cyanus (Asteraceae) populations. Plant Ecol. Evol. 148:191-198. GEAPSI

  70. Petit S., Munier-Jolain N.M., Bretagnolle V., Bockstaller C., Gaba S., Cordeau S., Lechenet M., Mézière D., Colbach N. (2015). Ecological intensification through pesticide reduction: weed control, weed biodiversity and sustainability in arable farming. Environ. Manage. 56:1078-1090. EcolDur

  71. Piroth L., Pol S., Miailhes P., Lacombe K., Lopes A., Fillion A., Loustaud-Ratti V., Borsa-Lebas F., Salmon D., Rosenthal E., Carrat F., Cacoub P. (for The GERMIVIC Study Group). (2015). Therapeutic management and evolution of chronic hepatitis B: does HIV still have an impact? The EPIB 2012 study. Liver Int. 35:1950-1958. MERS

  72. Piroth L., Paniez H., Taburet A.-M., Vincent C., Rosenthal E., Lacombe K., Billaud E., Rey D., Zucman D., Bailly F., Bronowicki J.-P., Simony M., Diallo A., Izopet J., Aboulker J.-P., Meyer L., Molina J.-M., Grp A.H.Q.S. (2015). High Cure Rate With 24 Weeks of Daclatasvir-Based Quadruple Therapy in Treatment-Experienced, Null-Responder Patients With HIV/Hepatitis C Virus Genotype 1/4 Coinfection: The ANRS HC30 QUADRIH Study. Clin. Infect. Dis. 61:817-825. MERS

  73. Prudent M., Salon C., Souleimanov A., Emery R.J.N., Smith D.L. (2015). Soybean is less impacted by water stress using Bradyrhizobium japonicum and thuricin-17 from Bacillus thuringiensis. Agron. Sustain. Dev. 35:749-757. GEAPSI

  74. Riah-Anglet W., Trinsoutrot-Gattin I., Martin-Laurent F., Laroche-Ajzenberg E., Norini M.-P., Latour X., Laval K. (2015). Soil microbial community structure and function relationships: A heat stress experiment. Appl. Soil Ecol. 86:121-130. EcolDur

  75. Robert-Gangneux F., Sterkers Y., Yera H., Accoceberry I., Menotti J., Cassaing S., Brenier-Pinchart M.P., Hennequin C., Delhaes L., Bonhomme J., Villena I., Scherer E., Dalle F., Touafek F., Filisetti D., Varlet-Marie E., Pelloux H., Bastien P. (2015). Molecular diagnosis of Toxoplasmosis in immunocompromised patients: a 3-Year Multicenter Retrospective Study. J. Clin. Microbiol. 53:1677-1684. MERS

  76. Rochelet M., Solanas S., Betelli L., Chantemesse B., Vienney F., Hartmann A. (2015). Rapid amperometric detection of Escherichia coli in wastewater by measuring β-D glucuronidase activity with disposable carbon sensors. Anal. Chim. Acta. 892:160-166. MERS

  77. Rochelet M., Solanas S., Betelli L., Neuwirth C., Vienney F., Hartmann A. (2015). Amperometric detection of extended-spectrum β-lactamase activity: application to the characterization of resistant E.coli strains. Analyst. 140:3351-3556. MERS

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  80. Storkey J., Holst N., Bøjer O.Q., Bigongialli F., Bocci G., Colbach N., Dorner Z., Riemens M.M., Sartorato I., Sønderkøv M., Verschwele A. (2015). Combining a weed traits database with a population dynamics model predicts shifts in weed communities. Weed Res. 55:206-218. EcolDur

  81. Strecker T., Barnard R.L., Niklaus P.A., Scherer-Lorenzen M., Weigelt A., Scheu S., Eisenhauer N. (2015). Effects of plant diversity, functional group composition, and fertilization on soil microbial properties in experimental grassland. PLoS One. 10:art 0125678 (16p.). EcolDur

  82. Tardy F., Moreau D., Dorel M., Damour G. (2015). Trait-based characterisation of cover plants’ light competitionstrategies for weed control in banana cropping systems in the FrenchWest Indies. Europ. J. Agronomy. 71:10-18. EcolDur

  83. Tardy V., Chabbi A., Charrier X., de Berranger C., Reignier T., Dequiedt S., Faivre-Primot C., Terrat S., Ranjard L., Maron P.-A. (2015). Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil. PLoS One. 10:e0130672 (17p.). EcolDur IPM (GenoSol)

  84. Tardy V., Spor A., Mathieu O., Lévèque J., Terrat S., Plassart P., Reignier T., Bardgett R., van der Puttene W.H., Roggero P.P., Seddaiuh G., Bagellah S., Lemanceau P., Ranjard L., Maron P.-A. (2015). Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil. Soil Biol. Biochem. . 90:204-213. EcolDur IPM

  85. Tayeh N., Aubert G., Pilet-Nayel M.-L., Lejeune-Hénault I., Warkentin T.D., Burstin J. (2015). Genomic tools in pea breeding programs: status and perspectives. Front. Plant Sci. 6:art 1037 (13p.). GEAPSI

  86. Tayeh N., Klein A., Le Paslier M.-C., Jacquin F., Houtin H., Rond C., Chabert-Martinello M., Magnin-Robert J.-B., Marget P., Aubert G., Burstin J. (2015) Genomic prediction in pea: effect of marker density and training population size and composition on prediction accuracy. Front. Plant Sci. 6:art 941 (11p.). GEAPSI

  87. Terrat S., Dequiedt S., Horrigue W., Lelièvre M., Cruaud C., Saby N.P.A., Jolivet C., Arrouays D., Maron P.-A., Ranjard L., Chemidlin Prévost-Bouré N. (2015). Improving soil bacterial taxa-area relationships assessment using DNA meta-barcoding. Heredity. 114:468-475. EcolDur IPM (GenoSol)

  88. Terrat S., Plassart P., Bourgeois E., Ferreira S., Dequiedt S., Adele-Dit-De-Renseville N., Lemanceau P., Bispo A., Chabbi A., Maron P.A., Ranjard L. (2015). Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition. Microb. Biotechnol. 8:131-142. EcolDur IPM (GenoSol)

  89. Thomson B.C., Tisserant E., Plassart P., Uroz S., Griffiths R.I., Hannula S.E., Buée M., Mougel C., Ranjard L., Van Veen J.A., Martin F., Bailey M., Lemanceau P. Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites. Soil Biol. Biochem. 88:403-413. EcolDur

  90. Trapet P., Kulik A., Lamotte O., Jeandroz S., Bourque S., Nicolas-Francès V., Rosnoblet C., Besson-Bard A., Wendehenne D. (2015). NO signaling in plant immunity: a tale of messengers. Phytochem. 112:72-79. IPM

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  92. Trouvelot S., Bonneau L., Redecker D., van Tuinen D., Adrian M., Wipf D. Arbuscular mycorrhiza symbiosis in viticulture. A review. Agron. Sustain. Dev. 35:1449-1467. IPM

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  96. Voisin A.-S., Prudent M., Duc G., Salon C. (2015). Pea nodule gradients explain N nutrition and limited symbiotic fixation in hypernodulating mutants. Agron. Sustain. Dev. 35:1529-1540. GEAPSI

  97. Vulgarakis-Minov S., Cointault F., Vangeyte J., Pieters J.G., Nuyttens D. (2015). Development of high-speed Image acquisition systems for spray characterization based on single-droplet experiments. Trans. ASABE. 58:27-37. GEAPSI

  98. Vulgarakis-Minov S., Cointault F., Vangeyte J., Pieters J.G., Nuyttens D. (2015). Droplet generation and characterization using a piezoelectric droplet generator and high speed imaging techniques. Crop Prot. 69:18-27. GEAPSI

  99. Zakaria A.B., Picaud F., Rattier T., Pudlo M., Saviot L., Chassagnon R., Lherminier J., Gharbi T., Micheau O., Herlem G. (2015). Nanovectorization of TRAIL with single wall carbon nanotubes enhances tumor cell killing. Nano Lett. 15:891-895. IPM
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